STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gata4GATA binding protein 4. (388 aa)    
Predicted Functional Partners:
nkx2-5
Homeobox domain-containing protein.
   
 0.947
sqstm1
Sequestosome 1.
    
 0.909
LOC101155194
Uncharacterized protein.
   
 0.904
LOC101173444
Uncharacterized protein.
   
 0.904
LOC101158607
Uncharacterized protein.
   
 0.904
LOC101167618
Uncharacterized protein.
   
 0.904
LOC101158954
Cingulin b.
     
  0.900
cgn
Cingulin a.
     
  0.900
zfpm2
Zinc finger protein, FOG family member 2a.
    
 0.816
hand2
Heart and neural crest derivatives expressed 2.
   
 0.788
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.