Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LOC101155571 | rx2 | ENSORLP00000030604 | ENSORLP00000022547 | Histone H2B; Belongs to the histone H2B family. | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | 0.507 |
LOC101155571-2 | rx2 | ENSORLP00000032177 | ENSORLP00000022547 | Histone H2B 1/2. | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | 0.463 |
LOC101155571-3 | rx2 | ENSORLP00000040266 | ENSORLP00000022547 | Histone H2B 1/2. | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | 0.463 |
LOC101155571-4 | rx2 | ENSORLP00000043965 | ENSORLP00000022547 | Histone H2B 1/2. | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | 0.463 |
LOC101163918 | rx2 | ENSORLP00000017599 | ENSORLP00000022547 | Glutamine synthetase. | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | 0.445 |
LOC101171546 | rx2 | ENSORLP00000040468 | ENSORLP00000022547 | Meis homeobox 2b. | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | 0.524 |
LOC101171546 | slc2a15b | ENSORLP00000040468 | ENSORLP00000016093 | Meis homeobox 2b. | Solute carrier family 2 member 15b; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. | 0.491 |
meis2 | rx2 | ENSORLP00000016454 | ENSORLP00000022547 | Meis homeobox 2a. | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | 0.524 |
meis2 | slc2a15b | ENSORLP00000016454 | ENSORLP00000016093 | Meis homeobox 2a. | Solute carrier family 2 member 15b; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. | 0.491 |
rx2 | LOC101155571 | ENSORLP00000022547 | ENSORLP00000030604 | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | Histone H2B; Belongs to the histone H2B family. | 0.507 |
rx2 | LOC101155571-2 | ENSORLP00000022547 | ENSORLP00000032177 | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | Histone H2B 1/2. | 0.463 |
rx2 | LOC101155571-3 | ENSORLP00000022547 | ENSORLP00000040266 | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | Histone H2B 1/2. | 0.463 |
rx2 | LOC101155571-4 | ENSORLP00000022547 | ENSORLP00000043965 | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | Histone H2B 1/2. | 0.463 |
rx2 | LOC101163918 | ENSORLP00000022547 | ENSORLP00000017599 | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | Glutamine synthetase. | 0.445 |
rx2 | LOC101171546 | ENSORLP00000022547 | ENSORLP00000040468 | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | Meis homeobox 2b. | 0.524 |
rx2 | meis2 | ENSORLP00000022547 | ENSORLP00000016454 | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | Meis homeobox 2a. | 0.524 |
rx2 | six3 | ENSORLP00000022547 | ENSORLP00000012924 | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | Homeobox protein SIX3; Transcriptional regulator which can act as both a transcriptional repressor and activator by binding a ATTA homeodomain core recognition sequence on these target genes. During forebrain development represses WNT1 expression allowing zona limitans intrathalamica formation and thereby ensuring proper anterio-posterior patterning of the diencephalon and formation of the rostral diencephalon. Acts as a direct upstream activator of SHH expression in the rostral diencephalon ventral midline and that in turn SHH maintains its expression. In addition, Six3 activity is re [...] | 0.448 |
rx2 | six3-2 | ENSORLP00000022547 | ENSORLP00000044015 | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | Homeobox protein SIX3. | 0.521 |
rx2 | slc2a15b | ENSORLP00000022547 | ENSORLP00000016093 | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | Solute carrier family 2 member 15b; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. | 0.661 |
six3 | rx2 | ENSORLP00000012924 | ENSORLP00000022547 | Homeobox protein SIX3; Transcriptional regulator which can act as both a transcriptional repressor and activator by binding a ATTA homeodomain core recognition sequence on these target genes. During forebrain development represses WNT1 expression allowing zona limitans intrathalamica formation and thereby ensuring proper anterio-posterior patterning of the diencephalon and formation of the rostral diencephalon. Acts as a direct upstream activator of SHH expression in the rostral diencephalon ventral midline and that in turn SHH maintains its expression. In addition, Six3 activity is re [...] | Retinal homeobox protein Rx2; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. | 0.448 |
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