STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111946454Interferon a3-like. (186 aa)    
Predicted Functional Partners:
LOC101166837
Uncharacterized protein.
   
 0.506
LOC101166593
Uncharacterized protein.
   
 0.441
cd59
CD59 molecule (CD59 blood group).
   
  
 0.413
ppp1r13l
Protein phosphatase 1, regulatory subunit 13 like.
   
 0.405
ppp1r13b
Protein phosphatase 1, regulatory subunit 13Bb.
   
 0.405
tp53bp2
Tumor protein p53 binding protein, 2a.
   
 0.405
LOC101164267
Protein phosphatase 1, regulatory subunit 13Ba.
   
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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