STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcaf10WD repeat domain 32. (533 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.987
ttc37
Tetratricopeptide repeat domain 37.
    
 0.825
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
    
 0.823
cdc73
Ro60, Y RNA binding protein.
    
 0.807
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.787
dcaf5
Ddb1 and cul4 associated factor 5.
     
 0.779
ddb1
Damage-specific DNA binding protein 1.
    
 0.769
ercc8
Excision repair cross-complementation group 8.
    
 0.762
wdtc1
WD and tetratricopeptide repeats 1.
   
 
 0.730
dcaf4
WD repeat domain 21.
     
 0.727
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.