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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100695842Calpain small subunit 1. (216 aa)    
Predicted Functional Partners:
I3JNG1_ORENI
Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.
 
 
 0.842
I3JDJ8_ORENI
Uncharacterized protein; Belongs to the peptidase C2 family.
 
 
 0.816
cast
Calpastatin isoform X5.
   
 0.799
capn7
Calpain 7; Belongs to the peptidase C2 family.
   
 0.772
ENSONIP00000078172
annotation not available
 
 
 0.766
LOC100709916
Calpain 5a; Belongs to the peptidase C2 family.
 
 
 0.750
CAPN6
Calpain 6; Belongs to the peptidase C2 family.
 
 
 0.734
LOC100691563
Calpain 5b; Belongs to the peptidase C2 family.
 
 
 0.725
ENSONIP00000058293
annotation not available
 
 
 0.724
capn10
Calpain 10; Belongs to the peptidase C2 family.
 
 
 0.685
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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