STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100702285Protein phosphatase, Mg2+/Mn2+ dependent, 1Db. (572 aa)    
Predicted Functional Partners:
ppm1d
Protein phosphatase, Mg2+/Mn2+ dependent, 1Da.
  
  
 
0.903
cbfb
Core-binding factor subunit beta.
     
 0.627
Chek2
Checkpoint kinase 2.
    
 
 0.624
Med31
Mediator of RNA polymerase II transcription subunit 31.
    
 
 0.533
tab3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
    
 0.527
tab2
TGF-beta activated kinase 1 (MAP3K7) binding protein 2.
    
 0.527
LOC100691239
Runt-related transcription factor.
    
 0.523
runx3
Runt-related transcription factor.
    
 0.523
runx2
Runt-related transcription factor.
    
 0.523
LOC102081483
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.521
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.