STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100692271BTB (POZ) domain containing 17a. (483 aa)    
Predicted Functional Partners:
LOC100699665
Leucine rich repeat and coiled-coil centrosomal protein 1.
     
 0.578
ttc13
Tetratricopeptide repeat domain 13.
    
 0.557
bbs9
Bardet-Biedl syndrome 9.
    
 0.540
bbs7
Bardet-Biedl syndrome 7.
    
 0.494
ttc8
Tetratricopeptide repeat domain 8.
    
 0.487
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.482
ubxn7
UBX domain protein 7.
    
  0.451
cdc42ep5
CRIB domain-containing protein.
    
 
 0.448
arrdc2
Arrestin domain containing 2.
      
 0.441
ENSONIP00000028305
Rubicon like autophagy enhancer.
      
 0.441
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.