STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100701199Charged multivesicular body protein 6a. (207 aa)    
Predicted Functional Partners:
vps25
Vacuolar protein-sorting-associated protein 25.
   
 0.970
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.969
vps36
Vacuolar protein sorting 36 homolog.
 
  
 0.958
chmp2a
Charged multivesicular body protein 2A.
   
 0.918
chmp3
Charged multivesicular body protein 3.
    
 0.916
LOC100705156
Charged multivesicular body protein 6.
  
  
 
0.901
mlkl
Mixed lineage kinase domain like pseudokinase.
     
  0.900
vps28
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.897
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
    
 0.897
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
    
 0.891
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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