STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mnx1Motor neuron and pancreas homeobox 1. (315 aa)    
Predicted Functional Partners:
rfx6
Regulatory factor X, 6.
      
 0.587
tbx20
T-box transcription factor 20.
    
 
 0.580
cryaa
Crystallin, alpha A; Belongs to the small heat shock protein (HSP20) family.
      
 0.489
ptf1a
Pancreas associated transcription factor 1a.
   
 
 0.481
rfx4
Regulatory factor X, 4.
      
 0.472
LOC100700859
Oligodendrocyte lineage transcription factor 2.
   
  
 0.403
neurod1
Neurogenic differentiation factor.
   
  
 0.401
ENSONIP00000073744
Neurogenin 3.
   
  
 0.401
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.