STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tgs1LYN proto-oncogene, Src family tyrosine kinase. (796 aa)    
Predicted Functional Partners:
Snrpf
Small nuclear ribonucleoprotein F.
    
  0.987
snrpe
Small nuclear ribonucleoprotein E.
    
 0.985
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.984
Snrpg
Small nuclear ribonucleoprotein G.
    
  0.984
ncoa6
Nuclear receptor coactivator 6.
    
 0.845
snrpd3
Small nuclear ribonucleoprotein Sm D3.
    
 0.799
gemin2
Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.
    
 0.795
ddx20
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
   
 0.749
Tep1
Telomerase protein component 1 isoform X1.
   
 0.722
gemin5
Gem (nuclear organelle) associated protein 5.
     
 0.709
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.