Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LOC100696048 | brip1 | ENSONIP00000013134 | ENSONIP00000056212 | General transcription factor IIH subunit. | BRCA1 interacting protein C-terminal helicase 1. | 0.909 |
LOC100696048 | ercc3 | ENSONIP00000013134 | ENSONIP00000004087 | General transcription factor IIH subunit. | Excision repair cross-complementation group 3. | 0.999 |
LOC100696048 | gtf2h1 | ENSONIP00000013134 | ENSONIP00000061516 | General transcription factor IIH subunit. | General transcription factor IIH, polypeptide 1. | 0.999 |
LOC100696048 | gtf2h4 | ENSONIP00000013134 | ENSONIP00000005972 | General transcription factor IIH subunit. | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | 0.999 |
Mlh1 | brca1 | ENSONIP00000037900 | ENSONIP00000020556 | MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). | Uncharacterized protein. | 0.894 |
Mlh1 | brip1 | ENSONIP00000037900 | ENSONIP00000056212 | MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). | BRCA1 interacting protein C-terminal helicase 1. | 0.981 |
Mlh1 | ercc3 | ENSONIP00000037900 | ENSONIP00000004087 | MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). | Excision repair cross-complementation group 3. | 0.474 |
Mlh1 | gtf2h4 | ENSONIP00000037900 | ENSONIP00000005972 | MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | 0.457 |
Mlh1 | palb2 | ENSONIP00000037900 | ENSONIP00000000235 | MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). | PALB2_WD40 domain-containing protein. | 0.462 |
Mlh1 | pms2 | ENSONIP00000037900 | ENSONIP00000024969 | MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). | PMS1 homolog 2, mismatch repair system component. | 0.999 |
brca1 | Mlh1 | ENSONIP00000020556 | ENSONIP00000037900 | Uncharacterized protein. | MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). | 0.894 |
brca1 | brip1 | ENSONIP00000020556 | ENSONIP00000056212 | Uncharacterized protein. | BRCA1 interacting protein C-terminal helicase 1. | 0.989 |
brca1 | palb2 | ENSONIP00000020556 | ENSONIP00000000235 | Uncharacterized protein. | PALB2_WD40 domain-containing protein. | 0.997 |
brca1 | pms2 | ENSONIP00000020556 | ENSONIP00000024969 | Uncharacterized protein. | PMS1 homolog 2, mismatch repair system component. | 0.645 |
brca1 | slf1 | ENSONIP00000020556 | ENSONIP00000014891 | Uncharacterized protein. | BRCT domain-containing protein. | 0.898 |
brca1 | topbp1 | ENSONIP00000020556 | ENSONIP00000007895 | Uncharacterized protein. | DNA topoisomerase II binding protein 1. | 0.987 |
brip1 | LOC100696048 | ENSONIP00000056212 | ENSONIP00000013134 | BRCA1 interacting protein C-terminal helicase 1. | General transcription factor IIH subunit. | 0.909 |
brip1 | Mlh1 | ENSONIP00000056212 | ENSONIP00000037900 | BRCA1 interacting protein C-terminal helicase 1. | MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). | 0.981 |
brip1 | brca1 | ENSONIP00000056212 | ENSONIP00000020556 | BRCA1 interacting protein C-terminal helicase 1. | Uncharacterized protein. | 0.989 |
brip1 | ercc3 | ENSONIP00000056212 | ENSONIP00000004087 | BRCA1 interacting protein C-terminal helicase 1. | Excision repair cross-complementation group 3. | 0.911 |
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