STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100701793Calmodulin-like 4b. (153 aa)    
Predicted Functional Partners:
LOC100690594
Serine/threonine-protein phosphatase.
    
 0.940
LOC100697276
Serine/threonine-protein phosphatase.
    
 0.940
LOC100706924
DnaJ (Hsp40) homolog, subfamily C, member 18.
    
 0.940
PPP3CA
Serine/threonine-protein phosphatase.
    
 0.940
LOC100705072
Serine/threonine-protein phosphatase.
    
 0.940
I3JAE5_ORENI
Protein kinase domain-containing protein.
   
 0.934
phkg1
Phosphorylase kinase, gamma 1a (muscle).
    
 0.934
LOC100701248
Calcium/calmodulin-dependent protein kinase IGb; Belongs to the protein kinase superfamily.
   
 0.934
phkg2
Phosphorylase kinase, gamma 2 (testis); Belongs to the protein kinase superfamily.
    
 0.934
CNGB1
Cyclic nucleotide gated channel subunit beta 1.
   
 0.933
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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