STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ascl1Achaete-scute family bHLH transcription factor 1a. (188 aa)    
Predicted Functional Partners:
TCF4
Transcription factor 4.
   
 0.706
LOC100707414
Transcription factor 3a.
   
 0.706
tcf12
Transcription factor 12.
   
 0.706
tcf3
Transcription factor 3b.
   
 0.706
LOC100695208
BHLH domain-containing protein.
   
 0.694
dlx1
Distal-less homeobox 1a.
   
  
 0.604
LOC100700683
ISL LIM homeobox 1.
   
 0.593
LOC100694743
BHLH domain-containing protein.
   
 
 0.591
hes4
Hairy-related 9.
   
 
 0.571
id2
Inhibitor of DNA binding 2a.
    
 0.569
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.