STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf2Ring finger protein 2. (397 aa)    
Predicted Functional Partners:
Bmi1
Bmi1 polycomb ring finger oncogene 1a.
   
 0.948
Pcgf5
Polycomb group ring finger 5a.
    
 0.933
pcgf2
RING-type domain-containing protein.
   
0.927
pcgf1
Polycomb group ring finger 1.
   
 0.893
PCGF3
Polycomb group ring finger 3.
    
 0.887
I3JS18_ORENI
Zgc:158376.
    
 
 0.885
LOC100692165
Lysine (K)-specific demethylase 2Ba.
    
 
 0.885
I3KQY8_ORENI
Si:ch211-195d17.2.
    
 0.885
CBX2
Chromobox 2.
    
 0.885
LOC100701413
Lysine (K)-specific demethylase 2Aa.
    
 
 0.885
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.