LOC100705237 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100705237

Carbonic anhydrase XVI b. (1400 aa)

Predicted Functional Partners:

Cntn2

0.659

lum

0.641

nin

0.600

MCM7

0.592

cntn5

0.590

cntn1

0.590

LOC100703160

0.590

LOC100696343

0.590

LOC100695819

0.590

LOC100695551

0.590

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cntn2	LOC100705237	ENSONIP00000006395	ENSONIP00000065215	Contactin 2.	Carbonic anhydrase XVI b.	0.659
LOC100695551	LOC100705237	ENSONIP00000067633	ENSONIP00000065215	Contactin 4.	Carbonic anhydrase XVI b.	0.590
LOC100695819	LOC100705237	ENSONIP00000059476	ENSONIP00000065215	Uncharacterized protein.	Carbonic anhydrase XVI b.	0.590
LOC100696343	LOC100705237	ENSONIP00000047474	ENSONIP00000065215	Contactin 3b.	Carbonic anhydrase XVI b.	0.590
LOC100703160	LOC100705237	ENSONIP00000037279	ENSONIP00000065215	Contactin 3a, tandem duplicate 2.	Carbonic anhydrase XVI b.	0.590
LOC100705237	Cntn2	ENSONIP00000065215	ENSONIP00000006395	Carbonic anhydrase XVI b.	Contactin 2.	0.659
LOC100705237	LOC100695551	ENSONIP00000065215	ENSONIP00000067633	Carbonic anhydrase XVI b.	Contactin 4.	0.590
LOC100705237	LOC100695819	ENSONIP00000065215	ENSONIP00000059476	Carbonic anhydrase XVI b.	Uncharacterized protein.	0.590
LOC100705237	LOC100696343	ENSONIP00000065215	ENSONIP00000047474	Carbonic anhydrase XVI b.	Contactin 3b.	0.590
LOC100705237	LOC100703160	ENSONIP00000065215	ENSONIP00000037279	Carbonic anhydrase XVI b.	Contactin 3a, tandem duplicate 2.	0.590
LOC100705237	MCM7	ENSONIP00000065215	ENSONIP00000055028	Carbonic anhydrase XVI b.	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	0.592
LOC100705237	cntn1	ENSONIP00000065215	ENSONIP00000035488	Carbonic anhydrase XVI b.	Contactin 1b.	0.590
LOC100705237	cntn5	ENSONIP00000065215	ENSONIP00000007231	Carbonic anhydrase XVI b.	Contactin 5.	0.590
LOC100705237	lum	ENSONIP00000065215	ENSONIP00000073422	Carbonic anhydrase XVI b.	Lumican.	0.641
LOC100705237	nin	ENSONIP00000065215	ENSONIP00000000660	Carbonic anhydrase XVI b.	Thyroid receptor-interacting protein 11-like.	0.600
MCM7	LOC100705237	ENSONIP00000055028	ENSONIP00000065215	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	Carbonic anhydrase XVI b.	0.592
MCM7	lum	ENSONIP00000055028	ENSONIP00000073422	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	Lumican.	0.719
MCM7	nin	ENSONIP00000055028	ENSONIP00000000660	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	Thyroid receptor-interacting protein 11-like.	0.693
cntn1	LOC100705237	ENSONIP00000035488	ENSONIP00000065215	Contactin 1b.	Carbonic anhydrase XVI b.	0.590
cntn5	LOC100705237	ENSONIP00000007231	ENSONIP00000065215	Contactin 5.	Carbonic anhydrase XVI b.	0.590