STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pds5aPDS5 cohesin associated factor A. (1296 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.980
LOC100692924
Structural maintenance of chromosomes protein.
   
 0.952
smc1a
Structural maintenance of chromosomes protein.
   
 0.952
LOC100712474
WAPL cohesin release factor b.
   
 0.930
wapl
WAPL cohesin release factor a.
   
 0.924
LOC100710134
RAD21 cohesin complex component a.
   
 0.914
LOC100705420
RAD21 cohesin complex component b.
   
 0.914
LOC100698455
RAD21 cohesin complex component like 1.
   
 0.914
LOC100699860
Nipped-B protein.
   
 0.907
nipbl
Nipped-B protein.
   
 0.907
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.