STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc73Coiled-coil domain containing 73. (1235 aa)    
Predicted Functional Partners:
ercc6l
ERCC excision repair 6 like, spindle assembly checkpoint helicase.
      
 0.548
setd2
SET domain containing 2, histone lysine methyltransferase.
      
 0.539
dph3
Diphthamide biosynthesis 3.
      
 0.510
LOC115575072
G-protein coupled estrogen receptor 1.
      
 0.505
dph2
Diphthamide biosynthesis 2.
      
 0.502
dph5
Diphthamide biosynthesis 5.
      
 0.485
LOC115585728
Protein tyrosine phosphatase domain-containing protein 1-like.
      
 0.482
ptpdc1
Protein tyrosine phosphatase domain containing 1.
      
 0.482
ercc6l2
ERCC excision repair 6 like 2.
      
 0.477
sclt1
Sodium channel and clathrin linker 1.
      
 0.437
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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