STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
magohMago homolog, exon junction complex subunit. (147 aa)    
Predicted Functional Partners:
rbm8a
RNA binding motif protein 8A.
   
 0.999
casc3
CASC3 exon junction complex subunit.
    
 0.989
LOC115588252
ranBP2-like and GRIP domain-containing protein 3.
   
  0.987
pym1
PYM homolog 1, exon junction complex associated factor.
    
 
 0.985
LOC115583072
Eukaryotic initiation factor 4A-III.
   
 0.984
LOC115583072-2
Eukaryotic initiation factor 4A-III.
   
 0.984
upf3a
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.975
upf3b
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.975
ALYREF
Aly/REF export factor.
   
 0.970
LOC115591047
THO complex subunit 4-like.
   
 0.959
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.