STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ier3ip1Immediate early response 3 interacting protein 1. (82 aa)    
Predicted Functional Partners:
tmem167a
Transmembrane protein 167A.
   
   0.670
mrps21
Mitochondrial ribosomal protein S21.
   
    0.552
yipf5
Yip1 domain family member 5.
   
 
 0.550
LOC115565997
Protein YIPF7-like.
   
 
 0.550
tmem167b
Transmembrane protein 167B.
   
   0.535
ENSSAUP00010011251
Selenoprotein S.
   
 
 0.532
edaradd
EDAR associated death domain.
   
 
 0.518
ENSSAUP00010014027
Yip1 interacting factor homolog A (S. cerevisiae).
    
 
 0.479
yif1b
Yip1 interacting factor homolog B, membrane trafficking protein.
    
 
 0.479
polr2l
RNA polymerase II subunit L.
   
    0.418
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.