STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttll6Tubulin tyrosine ligase like 6. (824 aa)    
Predicted Functional Partners:
cep41
Centrosomal protein 41.
      
 0.543
snx11
Sorting nexin 11.
      
 0.505
cdk5rap3
CDK5 regulatory subunit associated protein 3.
      
 0.485
agbl5
ATP/GTP binding protein like 5.
      
 0.442
LOC115591762
AP2-interacting clathrin-endocytosis protein-like.
      
 0.442
LOC115575745
Tetratricopeptide repeat protein 30A-like.
      
 0.426
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.