STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsm12LSM12 homolog. (196 aa)    
Predicted Functional Partners:
atxn2
Ataxin 2.
    
 0.983
atxn2l
Ataxin 2 like.
    
 0.983
LOC115571262
Ataxin-2-like protein.
    
 0.983
trnau1ap
tRNA selenocysteine 1 associated protein 1.
    
 
 0.867
LOC115572665
tRNA selenocysteine 1-associated protein 1-like.
    
 
 0.867
LOC115566657
Probable ATP-dependent RNA helicase ddx6.
    
 
 0.851
LOC115576278
Probable ATP-dependent RNA helicase ddx6.
    
 
 0.851
ENSSAUP00010069342
annotation not available
    
 
 0.851
ddx20
DEAD-box helicase 20.
    
 0.747
ENSSAUP00010010570
Pumilio RNA-binding family member 1.
    
   0.732
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.