STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdrt1CMT1A duplicated region transcript 1. (792 aa)    
Predicted Functional Partners:
skp1
S-phase kinase associated protein 1.
    
 0.966
rbx1
Ring-box 1.
    
 0.958
cdc6
Cell division cycle 6.
    
 0.940
cul1
Cullin 1.
    
 0.912
LOC115571389
Cullin-3.
    
 0.879
CUL3
Cullin-3-like.
    
 0.879
skp2
S-phase kinase associated protein 2.
    
 0.864
LOC115568942
F-box/WD repeat-containing protein 11.
   
0.851
LOC115583984
F-box only protein 2-like.
    
 0.829
fbxo4
F-box protein 4.
    
 0.822
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.