node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRN29132.1 | KRN29166.1 | IV38_GL000009 | IV38_GL000044 | rpsL protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
KRN29132.1 | era | IV38_GL000009 | IV38_GL000408 | rpsL protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.999 |
KRN29132.1 | rpsB | IV38_GL000009 | IV38_GL000502 | rpsL protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
KRN29132.1 | rpsE | IV38_GL000009 | IV38_GL000029 | rpsL protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
KRN29132.1 | rpsF | IV38_GL000009 | IV38_GL000821 | rpsL protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | Hypothetical protein; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
KRN29132.1 | rpsG | IV38_GL000009 | IV38_GL000010 | rpsL protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
KRN29132.1 | rpsJ | IV38_GL000009 | IV38_GL000012 | rpsL protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
KRN29132.1 | rpsK | IV38_GL000009 | IV38_GL000036 | rpsL protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
KRN29132.1 | rpsO | IV38_GL000009 | IV38_GL000286 | rpsL protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
KRN29132.1 | rpsP | IV38_GL000009 | IV38_GL000514 | rpsL protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
KRN29166.1 | KRN29132.1 | IV38_GL000044 | IV38_GL000009 | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | rpsL protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
KRN29166.1 | era | IV38_GL000044 | IV38_GL000408 | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.999 |
KRN29166.1 | rpsB | IV38_GL000044 | IV38_GL000502 | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
KRN29166.1 | rpsE | IV38_GL000044 | IV38_GL000029 | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
KRN29166.1 | rpsF | IV38_GL000044 | IV38_GL000821 | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Hypothetical protein; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
KRN29166.1 | rpsG | IV38_GL000044 | IV38_GL000010 | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
KRN29166.1 | rpsJ | IV38_GL000044 | IV38_GL000012 | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
KRN29166.1 | rpsK | IV38_GL000044 | IV38_GL000036 | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
KRN29166.1 | rpsO | IV38_GL000044 | IV38_GL000286 | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
KRN29166.1 | rpsP | IV38_GL000044 | IV38_GL000514 | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |