STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0GRT8_9BRASLOB domain-containing protein. (190 aa)    
Predicted Functional Partners:
R0FXB6_9BRAS
Uncharacterized protein.
    
 
 0.778
R0GFW0_9BRAS
Uncharacterized protein.
      
 0.760
R0GZQ1_9BRAS
Uncharacterized protein.
      
 0.735
R0GFF5_9BRAS
BZIP domain-containing protein.
      
 0.732
R0FTR5_9BRAS
Aa_trans domain-containing protein.
      
 0.710
R0G8Q0_9BRAS
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
      
 0.710
R0G0L1_9BRAS
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
      
 0.709
R0GTF8_9BRAS
LOB domain-containing protein.
      
 0.702
R0GXP9_9BRAS
SANT domain-containing protein.
      
 0.702
R0H7C9_9BRAS
SANT domain-containing protein.
      
 0.702
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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