STRINGSTRING
XP_006283162.1 protein (Capsella rubella) - STRING interaction network
"XP_006283162.1" - Uncharacterized protein in Capsella rubella
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_006283162.1Uncharacterized protein; Encoded by transcript CARUB_v10004192m (776 aa)    
Predicted Functional Partners:
XP_006288514.1
Uncharacterized protein; Encoded by transcript CARUB_v10001785m (254 aa)
           
  0.857
XP_006283139.1
Uncharacterized protein; Encoded by transcript CARUB_v10004165m (803 aa)
           
  0.748
XP_006303559.1
Uncharacterized protein; Encoded by transcript CARUB_v10011036m (233 aa)
           
  0.713
XP_006282440.1
Uncharacterized protein; Encoded by transcript CARUB_v10004087m (934 aa)
           
  0.713
XP_006279843.1
Uncharacterized protein; Encoded by transcript CARUB_v10028250m (231 aa)
           
  0.691
XP_006285106.1
Uncharacterized protein; Encoded by transcript CARUB_v10006439m (585 aa)
           
  0.688
XP_006282651.1
RING-type E3 ubiquitin transferase; Encoded by transcript CARUB_v10005064m (374 aa)
           
  0.672
XP_006284990.1
Uncharacterized protein; Encoded by transcript CARUB_v10006297m (291 aa)
           
  0.670
XP_006284445.1
Uncharacterized protein; Encoded by transcript CARUB_v10005626m (238 aa)
           
  0.670
XP_006282832.1
Uncharacterized protein; Encoded by transcript CARUB_v10006676m (801 aa)
           
  0.613
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella, Capsella rubella Reut.
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