R0GV18_9BRAS protein (Capsella rubella) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R0GV18_9BRAS

Uncharacterized protein. (691 aa)

Predicted Functional Partners:

R0GCB9_9BRAS

0.847

R0GW26_9BRAS

0.847

R0IBT1_9BRAS

0.807

R0HNZ3_9BRAS

0.761

R0FJV2_9BRAS

0.760

R0HCU0_9BRAS

0.735

R0GK33_9BRAS

0.734

R0EXI5_9BRAS

0.710

R0HP82_9BRAS

0.702

R0EVD4_9BRAS

0.699

Your Current Organism:

Capsella rubella

NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R0EVD4_9BRAS	R0GV18_9BRAS	R0EVD4	R0GV18	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.699
R0EXI5_9BRAS	R0GV18_9BRAS	R0EXI5	R0GV18	Uncharacterized protein.	Uncharacterized protein.	0.710
R0EXI5_9BRAS	R0HCU0_9BRAS	R0EXI5	R0HCU0	Uncharacterized protein.	Uncharacterized protein.	0.682
R0EXI5_9BRAS	R0HNZ3_9BRAS	R0EXI5	R0HNZ3	Uncharacterized protein.	Uncharacterized protein.	0.775
R0FJV2_9BRAS	R0GV18_9BRAS	R0FJV2	R0GV18	Protein kinase domain-containing protein.	Uncharacterized protein.	0.760
R0GCB9_9BRAS	R0GV18_9BRAS	R0GCB9	R0GV18	Uncharacterized protein.	Uncharacterized protein.	0.847
R0GK33_9BRAS	R0GV18_9BRAS	R0GK33	R0GV18	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.734
R0GV18_9BRAS	R0EVD4_9BRAS	R0GV18	R0EVD4	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.699
R0GV18_9BRAS	R0EXI5_9BRAS	R0GV18	R0EXI5	Uncharacterized protein.	Uncharacterized protein.	0.710
R0GV18_9BRAS	R0FJV2_9BRAS	R0GV18	R0FJV2	Uncharacterized protein.	Protein kinase domain-containing protein.	0.760
R0GV18_9BRAS	R0GCB9_9BRAS	R0GV18	R0GCB9	Uncharacterized protein.	Uncharacterized protein.	0.847
R0GV18_9BRAS	R0GK33_9BRAS	R0GV18	R0GK33	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.734
R0GV18_9BRAS	R0GW26_9BRAS	R0GV18	R0GW26	Uncharacterized protein.	Uncharacterized protein.	0.847
R0GV18_9BRAS	R0HCU0_9BRAS	R0GV18	R0HCU0	Uncharacterized protein.	Uncharacterized protein.	0.735
R0GV18_9BRAS	R0HNZ3_9BRAS	R0GV18	R0HNZ3	Uncharacterized protein.	Uncharacterized protein.	0.761
R0GV18_9BRAS	R0HP82_9BRAS	R0GV18	R0HP82	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.702
R0GV18_9BRAS	R0IBT1_9BRAS	R0GV18	R0IBT1	Uncharacterized protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.807
R0GW26_9BRAS	R0GV18_9BRAS	R0GW26	R0GV18	Uncharacterized protein.	Uncharacterized protein.	0.847
R0HCU0_9BRAS	R0EXI5_9BRAS	R0HCU0	R0EXI5	Uncharacterized protein.	Uncharacterized protein.	0.682
R0HCU0_9BRAS	R0GV18_9BRAS	R0HCU0	R0GV18	Uncharacterized protein.	Uncharacterized protein.	0.735