STRINGSTRING
XP_006284218.1 protein (Capsella rubella) - STRING interaction network
"XP_006284218.1" - Uncharacterized protein in Capsella rubella
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_006284218.1Uncharacterized protein; Encoded by transcript CARUB_v10005375m (295 aa)    
Predicted Functional Partners:
XP_006306929.1
Uncharacterized protein; Encoded by transcript CARUB_v10008495m (680 aa)
       
      0.685
XP_006290817.1
Uncharacterized protein; Encoded by transcript CARUB_v10016922m (579 aa)
       
      0.685
XP_006286546.1
Uncharacterized protein; Encoded by transcript CARUB_v10001776m (256 aa)
           
  0.670
XP_006307699.1
Uncharacterized protein; Encoded by transcript CARUB_v10009336m (402 aa)
           
  0.614
XP_006295772.1
Uncharacterized protein; Encoded by transcript CARUB_v10024894m (370 aa)
           
  0.614
XP_006286486.1
Uncharacterized protein; Encoded by transcript CARUB_v10000582m (571 aa)
           
  0.614
XP_006280659.1
Uncharacterized protein; Encoded by transcript CARUB_v10026619m (369 aa)
           
  0.614
XP_006279958.1
Uncharacterized protein; Encoded by transcript CARUB_v10025824m; Belongs to the glycosyl hydrolase 31 family (957 aa)
           
  0.614
XP_006290771.1
Uncharacterized protein; Encoded by transcript CARUB_v10016877m; Belongs to the AAA ATPase family (603 aa)
           
  0.599
XP_006280751.1
Uncharacterized protein; Encoded by transcript CARUB_v10026720m (343 aa)
           
  0.567
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella, Capsella rubella Reut.
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