STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0F6H8_9BRASHTH myb-type domain-containing protein. (295 aa)    
Predicted Functional Partners:
R0GRF0_9BRAS
Phosducin domain-containing protein.
      
 0.859
R0GRF8_9BRAS
Uncharacterized protein.
      
 0.760
R0HTE8_9BRAS
HTH myb-type domain-containing protein.
      
 0.760
R0H898_9BRAS
SPX domain-containing protein.
    
 
 0.718
R0F6N5_9BRAS
t-SNARE coiled-coil homology domain-containing protein.
    
 
 0.717
R0F6R9_9BRAS
Uncharacterized protein.
   
 
 0.701
R0GA09_9BRAS
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).
      
 0.701
R0HKN4_9BRAS
Uncharacterized protein.
      
 0.701
R0EZK9_9BRAS
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.667
R0I6V0_9BRAS
U1-type domain-containing protein.
      
 0.624
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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