STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0H861_9BRASUncharacterized protein. (330 aa)    
Predicted Functional Partners:
R0GGG4_9BRAS
Uncharacterized protein.
    
 0.990
R0EVF8_9BRAS
Uncharacterized protein.
    
 0.975
R0F8U1_9BRAS
Uncharacterized protein.
    
 0.912
R0I6D1_9BRAS
Uncharacterized protein.
   
  0.889
R0G6H8_9BRAS
Uncharacterized protein.
    
 0.883
R0GTI9_9BRAS
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.865
R0H685_9BRAS
WD_REPEATS_REGION domain-containing protein.
   
 0.864
R0I6X5_9BRAS
Uncharacterized protein.
   
  0.863
R0G0D6_9BRAS
X8 domain-containing protein.
  
  0.852
R0FF04_9BRAS
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.846
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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