STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0HAM4_9BRASNAC domain-containing protein. (257 aa)    
Predicted Functional Partners:
R0GHU9_9BRAS
NAC domain-containing protein.
  
 
 
0.875
R0GWC9_9BRAS
Uncharacterized protein.
      
 0.710
R0G5W8_9BRAS
Uncharacterized protein.
      
 0.701
R0FYJ1_9BRAS
LOB domain-containing protein.
  
   
 0.656
R0GI40_9BRAS
Uncharacterized protein.
      
 0.639
R0EUU2_9BRAS
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
   
 0.534
R0FGQ6_9BRAS
LOB domain-containing protein.
      
 0.516
R0EXS1_9BRAS
TCP domain-containing protein.
  
   
 0.515
R0GY12_9BRAS
Uncharacterized protein.
      
 0.512
R0GB60_9BRAS
Uncharacterized protein.
      
 0.510
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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