STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0FLN3_9BRASUncharacterized protein. (214 aa)    
Predicted Functional Partners:
R0GSU6_9BRAS
Uncharacterized protein.
      
 0.769
R0GPV1_9BRAS
C2H2-type domain-containing protein.
      
 0.760
R0H8M9_9BRAS
Uncharacterized protein.
     
 0.721
R0HGH0_9BRAS
PPM-type phosphatase domain-containing protein.
   
  
 0.720
R0FN56_9BRAS
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
     
 0.719
R0HZP7_9BRAS
Histone H2A; Belongs to the histone H2A family.
     
 0.712
R0HEN7_9BRAS
BHLH domain-containing protein.
      
 0.710
R0F5W3_9BRAS
Uncharacterized protein.
      
 0.702
R0HU07_9BRAS
C2H2-type domain-containing protein.
      
 0.702
R0I4Y6_9BRAS
MADS-box domain-containing protein.
      
 0.702
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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