STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0HEB9_9BRASUncharacterized protein. (1655 aa)    
Predicted Functional Partners:
R0GLA9_9BRAS
Uncharacterized protein.
   
 0.975
R0GU97_9BRAS
Uncharacterized protein.
    
 0.952
R0FCP4_9BRAS
WD_REPEATS_REGION domain-containing protein.
   
 0.950
R0GZ99_9BRAS
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 0.945
R0G301_9BRAS
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.943
R0H7H3_9BRAS
Uncharacterized protein.
    
 0.921
R0H9M6_9BRAS
Ubiquitinyl hydrolase 1.
    
 0.915
R0I446_9BRAS
Myb-like domain-containing protein.
      
 0.913
R0I1N4_9BRAS
TFIID_20kDa domain-containing protein.
    
 0.900
R0IBG1_9BRAS
TFIID_20kDa domain-containing protein.
    
 0.900
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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