STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0H5I3_9BRASGATA-type domain-containing protein. (287 aa)    
Predicted Functional Partners:
R0GA96_9BRAS
Protein kinase domain-containing protein.
    
 
 0.775
R0HYS1_9BRAS
Uncharacterized protein.
      
 0.702
R0HFJ7_9BRAS
BHLH domain-containing protein.
      
 0.682
R0I084_9BRAS
Formyl_trans_N domain-containing protein.
      
 0.636
R0FNE6_9BRAS
PB1 domain-containing protein.
      
 0.574
R0G6V0_9BRAS
Uncharacterized protein.
      
 0.541
R0ETR0_9BRAS
Uncharacterized protein.
      
 0.510
R0I8D0_9BRAS
C2H2-type domain-containing protein.
    
 
 0.490
R0FIV4_9BRAS
Protein kinase domain-containing protein.
    
 
 0.485
R0INQ4_9BRAS
Uncharacterized protein.
      
 0.478
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.