STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0HPC6_9BRASNAC domain-containing protein. (334 aa)    
Predicted Functional Partners:
R0HM09_9BRAS
Uncharacterized protein; Belongs to the glycosyl hydrolase 17 family.
      
 0.760
R0HUE3_9BRAS
AP2/ERF domain-containing protein.
      
 0.541
R0HTM2_9BRAS
Uncharacterized protein.
  
     0.515
R0GN99_9BRAS
Uncharacterized protein.
  
     0.508
R0INU8_9BRAS
GTD-binding domain-containing protein.
  
     0.507
R0EXS1_9BRAS
TCP domain-containing protein.
  
     0.503
R0GDT2_9BRAS
Uncharacterized protein.
  
     0.502
R0GUJ7_9BRAS
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.500
R0HFN2_9BRAS
Uncharacterized protein.
  
     0.488
R0HQM1_9BRAS
Uncharacterized protein.
  
     0.488
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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