STRINGSTRING
XP_006293500.1 protein (Capsella rubella) - STRING interaction network
"XP_006293500.1" - Uncharacterized protein in Capsella rubella
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_006293500.1Uncharacterized protein; Encoded by transcript CARUB_v10023565m (341 aa)    
Predicted Functional Partners:
XP_006294349.1
Mitogen-activated protein kinase; Encoded by transcript CARUB_v10023366m (398 aa)
       
 
  0.572
XP_006292783.1
Mitogen-activated protein kinase; Encoded by transcript CARUB_v10019032m (401 aa)
       
 
  0.572
XP_006284415.1
Uncharacterized protein; Encoded by transcript CARUB_v10005585m; Belongs to the expansin family (250 aa)
           
  0.524
XP_006300021.1
Uncharacterized protein; Encoded by transcript CARUB_v10016246m (161 aa)
           
  0.480
FAD2
Fatty acid desaturase; Encoded by transcript CARUB_v10013933m (383 aa)
           
  0.476
XP_006292976.1
E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (322 aa)
       
 
  0.436
XP_006306376.1
Uncharacterized protein; Encoded by transcript CARUB_v10012281m; Belongs to the CRISP family (162 aa)
           
  0.432
XP_006304441.1
Uncharacterized protein; Encoded by transcript CARUB_v10011055m; Belongs to the CRISP family (164 aa)
           
  0.432
XP_006293357.1
Uncharacterized protein; Encoded by transcript CARUB_v10022593m (936 aa)
           
  0.428
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella, Capsella rubella Reut.
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