STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0HL02_9BRASGRAS domain-containing protein; Belongs to the GRAS family. (501 aa)    
Predicted Functional Partners:
R0GW15_9BRAS
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
      
 0.679
R0I3Y4_9BRAS
GRAS domain-containing protein; Belongs to the GRAS family.
      
 0.674
R0HVC0_9BRAS
GRAS domain-containing protein; Belongs to the GRAS family.
      
0.667
R0GDG0_9BRAS
Uncharacterized protein.
      
 0.556
R0HCI8_9BRAS
RING-type domain-containing protein.
  
     0.500
R0IT42_9BRAS
F-box domain-containing protein.
  
     0.500
R0I5Q8_9BRAS
Uncharacterized protein.
  
     0.497
R0HG82_9BRAS
Uncharacterized protein.
  
     0.493
R0I5N3_9BRAS
F-box domain-containing protein.
  
     0.493
R0I7Q9_9BRAS
Uncharacterized protein.
  
     0.486
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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