STRINGSTRING
XP_006297577.1 protein (Capsella rubella) - STRING interaction network
"XP_006297577.1" - Uncharacterized protein in Capsella rubella
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_006297577.1Uncharacterized protein; Encoded by transcript CARUB_v10013600m (477 aa)    
Predicted Functional Partners:
XP_006306569.1
Serine/threonine-protein kinase TOR; Encoded by transcript CARUB_v10008062m (2481 aa)
       
 
  0.963
XP_006299577.1
Uncharacterized protein; Encoded by transcript CARUB_v10015752m (1343 aa)
     
 
  0.954
XP_006288531.1
40S ribosomal protein S6; Encoded by transcript CARUB_v10001803m; Belongs to the eukaryotic ribosomal protein eS6 family (249 aa)
       
 
  0.923
XP_006284414.1
40S ribosomal protein S6; Encoded by transcript CARUB_v10005584m; Belongs to the eukaryotic ribosomal protein eS6 family (250 aa)
       
 
  0.923
XP_006300027.1
Uncharacterized protein; Encoded by transcript CARUB_v10016251m (1101 aa)
     
 
0.879
XP_006287589.1
Uncharacterized protein; Encoded by transcript CARUB_v10000799m (495 aa)
   
 
0.869
XP_006297536.1
Uncharacterized protein; Encoded by transcript CARUB_v10013558m (486 aa)
   
 
0.868
XP_006296912.1
Uncharacterized protein; Encoded by transcript CARUB_v10012904m (959 aa)
       
 
  0.840
XP_006279621.1
Uncharacterized protein; Encoded by transcript CARUB_v10026426m (436 aa)
       
 
  0.813
XP_006299453.1
Uncharacterized protein; Encoded by transcript CARUB_v10015618m (404 aa)
       
 
  0.805
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella, Capsella rubella Reut.
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