STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0HYP1_9BRASTCP domain-containing protein. (406 aa)    
Predicted Functional Partners:
R0F0A0_9BRAS
NAC domain-containing protein.
    
 
 0.940
R0HG32_9BRAS
WD_REPEATS_REGION domain-containing protein.
      
 0.902
R0ID00_9BRAS
NAC domain-containing protein.
  
   
 0.896
R0HTJ6_9BRAS
SBP-type domain-containing protein.
      
 0.884
R0H9E4_9BRAS
Uncharacterized protein.
    
 
 0.858
R0HR08_9BRAS
Uncharacterized protein.
      
 0.855
R0HDZ9_9BRAS
TCP domain-containing protein.
    
 
 0.819
R0GZQ1_9BRAS
Uncharacterized protein.
    
 
 0.802
R0IBB6_9BRAS
TCP domain-containing protein.
    
 
 0.784
R0FMX1_9BRAS
TCP domain-containing protein.
    
 
 0.781
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.