STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0GQ92_9BRASMADS-box domain-containing protein. (386 aa)    
Predicted Functional Partners:
R0I2E6_9BRAS
MADS-box domain-containing protein.
  
 
 
0.785
R0FAT4_9BRAS
Uncharacterized protein.
     
 0.743
R0GLW5_9BRAS
SCP domain-containing protein; Belongs to the CRISP family.
      
 0.709
R0EZF4_9BRAS
MADS-box domain-containing protein.
      
 0.702
R0I3Y8_9BRAS
SCP domain-containing protein; Belongs to the CRISP family.
      
 0.702
R0FH15_9BRAS
SCP domain-containing protein; Belongs to the CRISP family.
      
 0.699
R0I988_9BRAS
MADS-box domain-containing protein.
      
 0.654
R0HW85_9BRAS
MADS-box domain-containing protein.
  
 
 
0.598
R0FKR3_9BRAS
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
      
 0.576
R0GC85_9BRAS
MADS-box domain-containing protein.
  
   
0.539
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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