STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0GQJ3_9BRASHTH myb-type domain-containing protein. (370 aa)    
Predicted Functional Partners:
R0GVF4_9BRAS
CLP1_P domain-containing protein.
      
 0.771
R0FYI6_9BRAS
PRKCSH-like domain-containing protein.
      
 0.760
R0GRH6_9BRAS
Uncharacterized protein.
      
 0.751
R0I123_9BRAS
Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
      
 0.751
R0IHA9_9BRAS
GDT1 family protein.
      
 0.710
R0GX97_9BRAS
Aa_trans domain-containing protein.
      
 0.702
R0ICR6_9BRAS
Uncharacterized protein.
      
 0.686
R0GJA3_9BRAS
J domain-containing protein.
      
 0.682
R0HIS9_9BRAS
Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.
      
 0.654
R0FKT7_9BRAS
NAC domain-containing protein.
      
 0.611
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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