STRINGSTRING
XP_006305493.1 protein (Capsella rubella) - STRING interaction network
"XP_006305493.1" - Uncharacterized protein in Capsella rubella
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_006305493.1Uncharacterized protein; Encoded by transcript CARUB_v10009957m (280 aa)    
Predicted Functional Partners:
XP_006288154.1
Uncharacterized protein; Encoded by transcript CARUB_v10001393m; Belongs to the cyclin family (334 aa)
       
 
  0.733
XP_006302026.1
Uncharacterized protein; Encoded by transcript CARUB_v10020009m (603 aa)
     
 
  0.728
XP_006280862.1
Uncharacterized protein; Encoded by transcript CARUB_v10026852m (304 aa)
     
   
  0.720
XP_006283136.1
Uncharacterized protein; Encoded by transcript CARUB_v10004163m (806 aa)
           
  0.708
XP_006283190.1
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (744 aa)
       
 
  0.678
XP_006305416.1
Uncharacterized protein; Encoded by transcript CARUB_v10009816m (311 aa)
       
 
  0.597
XP_006298161.1
Uncharacterized protein; Encoded by transcript CARUB_v10014211m (318 aa)
       
 
  0.597
XP_006282127.1
Uncharacterized protein; Encoded by transcript CARUB_v10028379m (733 aa)
           
  0.586
XP_006298182.1
Uncharacterized protein; Encoded by transcript CARUB_v10014231m; Belongs to the iron/ascorbate-dependent oxidoreductase family (310 aa)
       
 
  0.573
XP_006302348.1
Uncharacterized protein; Encoded by transcript CARUB_v10020411m (399 aa)
           
  0.572
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella, Capsella rubella Reut.
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