STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO27727.1Predicted DNA-binding protein with PD1-like DNA-binding motif. (275 aa)    
Predicted Functional Partners:
SFO27697.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
     0.986
SFO27669.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
     0.946
SFO27644.1
Transcriptional regulator, IclR family.
 
     0.933
SFO27757.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
    0.855
SFO27621.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.852
SFO27592.1
TRAP transporter, DctM subunit.
 
     0.819
RibD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.475
SFN76189.1
Adenosylhomocysteine nucleosidase.
  
     0.457
SFN96709.1
Tripartite tricarboxylate transporter TctB family protein.
  
     0.453
SFO60338.1
DNA-binding transcriptional regulator, IclR family.
 
     0.447
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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