STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40894.1Pfam:pfam05013 N-formylglutamate amidohydrolase. (265 aa)    
Predicted Functional Partners:
AMS40896.1
C4-dicarboxylate ABC transporter; Pfam:pfam06808 DctM-like transporters.
 
   
 0.796
AMS40895.1
C4-dicarboxylate ABC transporter permease; Pfam:pfam04290 Tripartite ATP-independent periplasmic transporters, DctQ component.
 
   
 0.781
AMS40893.1
RpiR family transcriptional regulator; Pfam:pfam01380 SIS domain.
 
  
 0.754
AMS40897.1
C4-dicarboxylate ABC transporter; Pfam:pfam03480 Bacterial extracellular solute-binding protein, family 7.
 
   
 0.662
AMS40898.1
Pfam:pfam00120 Glutamine synthetase, catalytic domain.
 
  
 0.621
AMS43077.1
N-formimino-L-glutamate deiminase.
  
  
  0.585
AMS40899.1
Pfam:pfam00171 Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
 
     0.557
AMS40901.1
Pfam:pfam00465 Iron-containing alcohol dehydrogenase.
 
   
 0.535
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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