STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42471.1Helix-turn-helix domain protein. (63 aa)    
Predicted Functional Partners:
AMS42469.1
Hypothetical protein.
 
     0.806
AMS40163.1
Pfam:pfam11994 Protein of unknown function (DUF3489).
  
     0.762
AMS40164.1
Putative bacteriophage-related protein; Pfam:pfam11149 Protein of unknown function (DUF2924).
 
  
 0.734
AMS42470.1
Hypothetical protein.
 
     0.733
AMS40165.1
Resolvase domain-containing protein; Pfam:pfam00239 Resolvase, N terminal domain.
 
  
 0.732
AMS42477.1
Modification methylase DpnIIB; Pfam:pfam01555 DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.717
AMS40151.1
DNA methylase N-4/N-6 domain protein; Pfam:pfam01555 DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.629
AMS42472.1
Hypothetical protein.
       0.466
AMS41555.1
Pfam:pfam00440 Bacterial regulatory proteins, tetR family.
  
     0.413
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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