STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001700965_02527Unannotated protein. (1004 aa)    
Predicted Functional Partners:
GCA_001700965_02554
Unannotated protein.
  
  
  0.800
GCA_001700965_00521
Unannotated protein.
  
  
  0.797
GCA_001700965_01216
Unannotated protein.
  
  
 
0.787
GCA_001700965_01542
Unannotated protein.
  
  
 
0.779
GCA_001700965_02546
Unannotated protein.
  
  
  0.740
GCA_001700965_00642
Unannotated protein.
  
  
  0.723
GCA_001700965_01671
Unannotated protein.
  
  
  0.715
GCA_001700965_03929
Unannotated protein.
  
  
  0.715
GCA_001700965_02115
Unannotated protein.
  
  
  0.709
GCA_001700965_00372
Unannotated protein.
  
  
  0.704
Your Current Organism:
Stenotrophomonas nitritireducens
NCBI taxonomy Id: 83617
Other names: ATCC BAA-12, CCUG 46888, CIP 107228, DSM 12575, JCM 13311, S. nitritireducens, Stenotrophomonas nitritireducens Finkmann et al. 2000, strain L2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.