STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srsf7Spermine synthase. (234 aa)    
Predicted Functional Partners:
srsf1
Serine/arginine-rich splicing factor 1; May play a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Belongs to the splicing factor SR family.
   
 
0.945
tra2b
Ras-like without CAAX 1.
   
 
 0.932
LOC100490733
Selenoprotein I.
   
 0.926
srsf3
Phosphate-regulating endopeptidase homolog X-linked.
   
 
0.925
srpk1
SMG7 nonsense mediated mRNA decay factor.
    
 0.913
ENSXETP00000050479
RRM domain-containing protein.
   
 
0.822
tra2a
Pleckstrin homology and RhoGEF domain containing G5.
   
 
 0.786
srsf9
Splicing factor, arginine/serine-rich 9.
   
 
0.772
hnrnpa2b1
Uncharacterized protein.
   
 
 0.655
hnrnpc
Ceramide synthase 1.
   
 
 0.642
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.