STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
des.1Methionine aminopeptidase 1; Belongs to the intermediate filament family. (474 aa)    
Predicted Functional Partners:
mcm10
Protein MCM10 homolog; Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication. Additionally, plays a role in preventing DNA damage during replication (By similarity).
   
 
 0.540
tnnc1
CTD small phosphatase like.
   
 0.518
myl1
Uncharacterized protein.
   
 
  0.515
PSD3
Pleckstrin and Sec7 domain containing 3.
   
 
  0.510
myl4
4-aminobutyrate aminotransferase.
   
 
  0.501
cndp1
M20_dimer domain-containing protein.
     
  0.499
marchf6
WNT inhibitory factor 1.
     
  0.499
c6.2
SSU72 homolog, RNA polymerase II CTD phosphatase.
     
  0.499
nes
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
 
0.450
MBP
Myelin basic protein.
   
  
 0.419
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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