STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d15Sarcolemma associated protein. (666 aa)    
Predicted Functional Partners:
gabarapl2
Olfactory receptor family 3 subfamily A member 1.
   
 0.929
gabarapl1
Gamma-aminobutyric acid receptor-associated protein-like 1; Involved in autophagy; Belongs to the ATG8 family.
   
 0.925
rab7b
Uncharacterized protein.
   
 0.924
rab7a
RAB7A, member RAS oncogene family.
    
 0.920
MGC75872
Uncharacterized protein.
     
 0.904
tbc1d17
TNF receptor associated factor 7.
  
  
 
0.903
zfc3h1
NFU1 iron-sulfur cluster scaffold.
      
 0.645
CPNE8
Copine 8.
      
 0.623
ZNF536
Zinc finger protein 536.
      
 0.606
Sergef
Uncharacterized protein.
   
  
 0.586
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.