STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcaf13DDB1- and CUL4-associated factor 13; Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex (By similarity) (364 aa)    
Predicted Functional Partners:
pwp2
PWP2 periodic tryptophan protein homolog
   
 
 0.997
RRP9
Ribosomal rna processing 9, u3 small nucleolar rna binding protein; Ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)
  
 
 0.997
wdr36
U3 small nucleolar RNA-associated protein 21; Uncharacterized protein; WD repeat domain 36
   
 
 0.995
utp6
UTP6, small subunit (SSU) processome component, homolog
   
 
 0.995
nop58
NOP58 ribonucleoprotein homolog
   
 
 0.995
heatr1
Heat repeat-containing 1; HEAT repeat containing 1
   
 
 0.994
krr1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly
   
 
 0.994
cirh1a
U3 small nucleolar RNA-associated protein 4 homolog; Cirrhosis, autosomal recessive 1A (cirhin)
   
 
 0.994
wdr46
U3 small nucleolar RNA-associated protein 7; WD repeat domain 46
   
 
 0.994
noc4l
U3 small nucleolar RNA-associated protein 19; Nucleolar complex associated 4 homolog
   
 
 0.993
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. (Silurana) tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, western clawed frog
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