STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pds5bUncharacterized protein. (1449 aa)    
Predicted Functional Partners:
WAPL
WAPL cohesin release factor.
   
 
 0.974
smc3
Structural maintenance of chromosomes protein.
   
 
 0.933
RAD21
RAD21 cohesin complex component.
   
 
 0.931
NIPBL
Nipped-B protein.
   
 
 0.842
rec8
Malate dehydrogenase, cytoplasmic.
   
 
 0.826
smc1a
Structural maintenance of chromosomes protein.
   
 
 0.817
smc1b
Structural maintenance of chromosomes protein.
   
 
 0.817
esco2
Uncharacterized protein.
   
 
 0.736
cdca5
LOC100145078 protein.
    
 
 0.735
SMC5
Structural maintenance of chromosomes 5.
   
 
 0.729
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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