STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pms1Collagen alpha-1(II) chain. (921 aa)    
Predicted Functional Partners:
mlh1
Mitochondrial ribosomal protein L1.
  
 
 
0.968
MSH2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 
 0.947
MSH6
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 
 0.944
MSH3
MutS homolog 3.
 
 
 0.933
msh4
Adenylate kinase 7.
 
 
 0.918
msh5
Cell growth regulator with ring finger domain 1.
  
 
 0.885
exo1
Ubiquitin-fold modifier conjugating enzyme 1.
   
 
 0.816
pold1
DNA polymerase.
   
 0.791
pms2
Peripherin 2 (retinal degeneration, slow).
  
 
0.756
mlh3
Uncharacterized protein.
  
 
 
0.731
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.